Log in if you already have an account.
Quick Info
- Secure cloud hosting
- Secure authentication
- 1.0.0
- Sep 05, 2025
AlphaFold
Access the AlphaFold Protein Structure Database for predictions, analysis, and visualization.
Description
• 🧬 **Structure Retrieval**: Get AlphaFold predictions by UniProt ID in PDB, CIF, BCIF, or JSON formats.
• 🔍 **Search & Discovery**: Find proteins by name, gene, or organism.
• 📊 **Confidence Analysis**: Get per-residue confidence scores and identify high/low confidence regions.
• ⚡ **Batch Processing**: Retrieve and analyze multiple protein structures simultaneously.
• 🎨 **Visualization Preparation**: Export data ready for visualization in PyMOL or ChimeraX.
Example prompts:
Copy these prompts to get started quickly with AlphaFold in your Simtheory workspace.
How It Works
1. Install the MCP
Install AlphaFold from your Simtheory workspace with one click.
2. Connect Your Account
Securely authorize access to your AlphaFold account.
3. Start Using
Your AI can now interact with AlphaFold on your behalf.
Users also installed these MCPs
Google Maps
Access Google Maps for location data, directions, and more.
X DeepSearch
Performs a deep research query limited specifically to the X platform.
Data.gov
Access open data resources from the U.S. government.
Grok DeepSearch
Conducts deep research using Grok's live search capabilities across all available sources (Web, X, News, RSS).
Solcast
Access global solar resource assessment and forecasting data for irradiance and PV power, powered by a global fleet of weather satellites.
Google Search
Search the web with Google grounded search
Ready to use AlphaFold MCP Server?
Sign up for Simtheory and install this MCP directly into your workspace to start leveraging its capabilities.
Get Started with Simtheory